PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016450424.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 286aa    MW: 31438.5 Da    PI: 8.9863
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016450424.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.38.3e-14101145347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+  ++ + ++lG+g+W+ I+r + ++Rt+ q+ s+ qky
   XP_016450424.1 101 AWTEEEHRTFLVGLEKLGKGDWRGISRNFVTTRTPTQVASHAQKY 145
                      7*******************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501588.829318IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129417.15794150IPR017930Myb domain
SuperFamilySSF466893.04E-1796150IPR009057Homeodomain-like
TIGRFAMsTIGR015572.3E-1798148IPR006447Myb domain, plants
SMARTSM007172.6E-1098148IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.0E-1199144IPR009057Homeodomain-like
CDDcd001674.74E-9101146No hitNo description
PfamPF002491.8E-11101145IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MGRKCSHCGK IGHNSRTCSS FKVGAISCGL RLFGVQVVDI SASSSSAYDV QLKKSLSLDC  60
LSSPPPTVSS SSEKTTSCTN IGSLSDCLLG QVHQDRRKGV AWTEEEHRTF LVGLEKLGKG  120
DWRGISRNFV TTRTPTQVAS HAQKYFLRLS THYHLNNNKR RSSLFDLVRS NNKNHHETSP  180
DFANSTHSLT SLKEVCQETS RPSLLMDLNS SGEDIATKDH QHCKNTQQPL WPYEFLASHQ  240
MVSSSPITMS ISPVAVALDL ELSLAAPRNA DKNKPNTFLI GPIPVT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009593865.10.0PREDICTED: myb-like protein J
RefseqXP_016450424.10.0PREDICTED: myb-like protein J
TrEMBLM1AKK62e-79M1AKK6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000009027e-72(Solanum tuberosum)
STRINGPGSC0003DMT4000247566e-72(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA33852147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56840.11e-47MYB_related family protein